dipper.models.BiolinkVocabulary module

class dipper.models.BiolinkVocabulary.BioLinkVocabulary

Bases: object

bl_file_with_path = '/home/docs/checkouts/readthedocs.org/user_builds/dipper/checkouts/latest/resources/biolink_vocabulary.yaml'

bl_vocab = {'curie_prefix': 'biolink', 'terms': ['AnatomicalEntity', 'Association', 'BiologicalProcess', 'BiologicalSex', 'Case', 'category', 'ChemicalSubstance', 'CellLine', 'Disease', 'DataFile', 'DataSet', 'DataSetVersion', 'DiseaseOrPhenotypicFeature', 'EnvironmentFeature', 'ExposureEvent', 'EvidenceType', 'FrequencyValue', 'Gene', 'Genotype', 'GenomicEntity', 'GeneProduct', 'GeneGrouping', 'GeneToGeneHomologyAssociation', 'Genome', 'GenomeBuild', 'GeneFamily', 'GenomicSequenceLocalization', 'InformationContentEntity', 'IndividualOrganism', 'LifeStage', 'MolecularEntity', 'NamedThing', 'NoncodingRnaProduct', 'OrganismTaxon', 'OntologyClass', 'PopulationOfIndividualOrganisms', 'Publications', 'PhenotypicFeature', 'Provider', 'Protein', 'Publication', 'Procedure', 'Pathway', 'SourceFile', 'SequenceVariant', 'Transcript', 'Zygosity']}

key = 'Zygosity'

terms = {'AnatomicalEntity': 'biolink:AnatomicalEntity', 'Association': 'biolink:Association', 'BiologicalProcess': 'biolink:BiologicalProcess', 'BiologicalSex': 'biolink:BiologicalSex', 'Case': 'biolink:Case', 'CellLine': 'biolink:CellLine', 'ChemicalSubstance': 'biolink:ChemicalSubstance', 'DataFile': 'biolink:DataFile', 'DataSet': 'biolink:DataSet', 'DataSetVersion': 'biolink:DataSetVersion', 'Disease': 'biolink:Disease', 'DiseaseOrPhenotypicFeature': 'biolink:DiseaseOrPhenotypicFeature', 'EnvironmentFeature': 'biolink:EnvironmentFeature', 'EvidenceType': 'biolink:EvidenceType', 'ExposureEvent': 'biolink:ExposureEvent', 'FrequencyValue': 'biolink:FrequencyValue', 'Gene': 'biolink:Gene', 'GeneFamily': 'biolink:GeneFamily', 'GeneGrouping': 'biolink:GeneGrouping', 'GeneProduct': 'biolink:GeneProduct', 'GeneToGeneHomologyAssociation': 'biolink:GeneToGeneHomologyAssociation', 'Genome': 'biolink:Genome', 'GenomeBuild': 'biolink:GenomeBuild', 'GenomicEntity': 'biolink:GenomicEntity', 'GenomicSequenceLocalization': 'biolink:GenomicSequenceLocalization', 'Genotype': 'biolink:Genotype', 'IndividualOrganism': 'biolink:IndividualOrganism', 'InformationContentEntity': 'biolink:InformationContentEntity', 'LifeStage': 'biolink:LifeStage', 'MolecularEntity': 'biolink:MolecularEntity', 'NamedThing': 'biolink:NamedThing', 'NoncodingRnaProduct': 'biolink:NoncodingRnaProduct', 'OntologyClass': 'biolink:OntologyClass', 'OrganismTaxon': 'biolink:OrganismTaxon', 'Pathway': 'biolink:Pathway', 'PhenotypicFeature': 'biolink:PhenotypicFeature', 'PopulationOfIndividualOrganisms': 'biolink:PopulationOfIndividualOrganisms', 'Procedure': 'biolink:Procedure', 'Protein': 'biolink:Protein', 'Provider': 'biolink:Provider', 'Publication': 'biolink:Publication', 'Publications': 'biolink:Publications', 'SequenceVariant': 'biolink:SequenceVariant', 'SourceFile': 'biolink:SourceFile', 'Transcript': 'biolink:Transcript', 'Zygosity': 'biolink:Zygosity', 'category': 'biolink:category'}

yaml_file = <_io.TextIOWrapper name='/home/docs/checkouts/readthedocs.org/user_builds/dipper/checkouts/latest/resources/biolink_vocabulary.yaml' mode='r' encoding='UTF-8'>