dipper.sources.MGISlim module

class dipper.sources.MGISlim.MGISlim(graph_type, are_bnodes_skolemized, data_release_version=None)

Bases: dipper.sources.Source.Source

slim mgi model only containing Gene to phenotype associations Uses mousemine: http://www.mousemine.org/mousemine/begin.do python lib api http://intermine.org/intermine-ws-python/

fetch(is_dl_forced=False)

abstract method to fetch all data from an external resource. this should be overridden by subclasses :return: None

parse(limit=None)

abstract method to parse all data from an external resource, that was fetched in fetch() this should be overridden by subclasses :return: None