dipper.sources.MyChem module

class dipper.sources.MyChem.MyChem(graph_type, are_bnodes_skolemized, data_release_version=None)

Bases: dipper.sources.Source.Source

static add_relation(results, relation)

static check_uniprot(target_dict)

static chunks(l, n)

Yield successive n-sized chunks from l.

static execute_query(query)

fetch(is_dl_forced=False)

abstract method to fetch all data from an external resource. this should be overridden by subclasses :return: None

fetch_from_mychem()

static format_actions(target_dict)

static get_drug_record(ids, fields)

static get_inchikeys()

make_triples(source, package)

parse(limit=None)

abstract method to parse all data from an external resource, that was fetched in fetch() this should be overridden by subclasses :return: None

static return_target_list(targ_in)