dipper.sources.MGISlim module

class dipper.sources.MGISlim.MGISlim(graph_type, are_bnodes_skolemized)

Bases: dipper.sources.Source.Source

slim mgi model only containing Gene to phenotype associations Uses mousemine: http://www.mousemine.org/mousemine/begin.do

fetch(is_dl_forced)

abstract method to fetch all data from an external resource. this should be overridden by subclasses :return: None

parse(limit=None)

abstract method to parse all data from an external resource, that was fetched in fetch() this should be overridden by subclasses :return: None