dipper.sources.Monarch module

class dipper.sources.Monarch.Monarch(graph_type, are_bnodes_skolemized)

Bases: dipper.sources.Source.Source

This is the parser for data curated by the [Monarch Initiative](https://monarchinitiative.org). Data is currently maintained in a private repository, soon to be released.

fetch(is_dl_forced=False)

abstract method to fetch all data from an external resource. this should be overridden by subclasses :return: None

parse(limit=None)

abstract method to parse all data from an external resource, that was fetched in fetch() this should be overridden by subclasses :return: None

process_omia_phenotypes(limit)