dipper.sources.ZFINSlim module¶
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class
dipper.sources.ZFINSlim.ZFINSlim(graph_type, are_bnodes_skolemized)¶ Bases:
dipper.sources.Source.Sourcezfin mgi model only containing Gene to phenotype associations Using the file here: https://zfin.org/downloads/phenoGeneCleanData_fish.txt
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fetch(is_dl_forced=False)¶ abstract method to fetch all data from an external resource. this should be overridden by subclasses :return: None
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files= {'g2p_clean': {'url': 'https://zfin.org/downloads/phenoGeneCleanData_fish.txt', 'file': 'phenoGeneCleanData_fish.txt.txt'}, 'zpmap': {'url': 'http://compbio.charite.de/hudson/job/zp-owl-new/lastSuccessfulBuild/artifact/zp.annot_sourceinfo', 'file': 'zp-mapping.txt'}}¶
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parse(limit=None)¶ abstract method to parse all data from an external resource, that was fetched in fetch() this should be overridden by subclasses :return: None
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