dipper.sources.BioGrid module¶

class dipper.sources.BioGrid.BioGrid(graph_type, are_bnodes_skolemized, data_release_version=None, tax_ids=None)¶

Biogrid interaction data

biogrid_ids = [106638, 107308, 107506, 107674, 107675, 108277, 108506, 108767, 108814, 108899, 110308, 110364, 110678, 111642, 112300, 112365, 112771, 112898, 199832, 203220, 247276, 120150, 120160, 124085]¶

fetch(is_dl_forced=False)¶

Parameters:	is_dl_forced –
Returns:	None

files = {'identifiers': {'file': 'BIOGRID-IDENTIFIERS-LATEST.tab.zip', 'url': 'https://downloads.thebiogrid.org/Download/BioGRID/Latest-Release/BIOGRID-IDENTIFIERS-LATEST.tab.zip'}, 'interactions': {'file': 'BIOGRID-ALL-LATEST.mitab.zip', 'url': 'https://downloads.thebiogrid.org/Download/BioGRID/Latest-Release/BIOGRID-ALL-LATEST.mitab.zip'}}¶

getTestSuite()¶: An abstract method that should be overwritten with tests appropriate for the specific source. :return:

parse(limit=None)¶

Parameters:	limit –
Returns: