dipper.sources.MyChem module¶
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class
dipper.sources.MyChem.
MyChem
(graph_type, are_bnodes_skolemized, data_release_version=None)¶ Bases:
dipper.sources.Source.Source
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static
add_relation
(results, relation)¶
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static
check_uniprot
(target_dict)¶
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static
chunks
(l, n)¶ Yield successive n-sized chunks from l.
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static
execute_query
(query)¶
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fetch
(is_dl_forced=False)¶ abstract method to fetch all data from an external resource. this should be overridden by subclasses :return: None
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fetch_from_mychem
()¶
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static
format_actions
(target_dict)¶
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static
get_drug_record
(ids, fields)¶
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static
get_inchikeys
()¶
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make_triples
(source, package)¶
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parse
(limit=None)¶ abstract method to parse all data from an external resource, that was fetched in fetch() this should be overridden by subclasses :return: None
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static
return_target_list
(targ_in)¶
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static